Amongst ancient writing on bees and beekeeping the obvious sources are in Pliny Natural History where he makes several mentions of both including in one section how the honeycombs would be weighed and a decision made on how much to put back into the hive. Something any modern apiarist presumably knows only too well.
Specifically in Book XXI, 47, Pliny declares his view that the best beehives are made from bark, the next best from fennel-giant and the third of osier although also mentioning some made from translucent stone and the need to apply cow dung over winter.
There is a short article on Finds of Graeco-Roman Beehives from Sphakia, SW Crete
Although it is based on fragmentary surface finds it is described as
This item from Malta Inside Out has a photograph of a style of apiary which was used in Malta from at least the Roman period up to recent times in which recesses are built into walls where beehives were placed. The style of construction of both the recesses and how the bee hives are placed in the recesses allows the rear of the hive to be accessed and the honeycombs extracted.
There is actually evidence for beekeeping going back long before the Roman period as this Israeli item indicates describing the discovery of three rows of beehives